(2) Next, cluster the sequences using CD-HIT, choosing a high value for -c so as to obtain clusters of highly similar sequences: cd-hit -i pdbaa -o pdb99 -c 0.99 -n 5ġ 1676aa, >gi|190016356|pdb|3CU7|A.

(1) First, retrieve sequences of PDB chains in FASTA format: wget However, I think it is not too much work to craft a solution using a few tools. I don't know of a server or database for which this information has been pre-computed or can be retrieved by a search. You can also head north to Bukhansan National Park on lines 1 and 7 or Gwanaksan Mountain via Line 2.*EDIT: for anyone interested, I expanded on this answer in a blog post* Incheon’s west coast island ferries to Deokjeokdo or Ijakdo are accessible via line 1, and real makguksu in Chuncheon is a skip and a hop away on the ITX line. Skip the highway by opting to use the metro and public buses to nearby destinations (for a list of apps to download, check out The Top 5 Apps to Download If You Live in South Korea). Korea’s August traffic is infamous as everyone races to leave the asphalt-covered city. Servings are made for two or more, so bring a friend and share! Good patbingsu is available at many coffee shops during the summer. Topping variations include nuts, fruit, rice cakes, condensed milk, and candy. Patbingsu is described perfectly as a “frozen dessert bibimbap.” Other than a mountain of shaved ice and sweet red beans, there are no set ingredients in patbingsu. For a list of parks in Seoul, check out our 10 Magazine Parks Directory Listings. Bring a basket and have a romantic summer picnic as the sun sets over the 63 Building. Bike and walking paths pass the manicured parkland, ideal for enjoying the cooling river breeze. Slicing Seoul in two, the giant Han River Park serves as the perfect escape from the busy city streets. There are tons of fun things to do and activities at the Han River during summer. For other healthy summer eating tips, read 5 Tips for Healthy Summer Eating. Ideal for replenishing your electrolytes, samgyetang fires up the kick in your step needed to get through long and hot summer days.

This hearty dish of boiled chicken stuffed with rice, ginseng, and other local roots and herbs has a home-cooked goodness that will leave you licking the bowl.

Yes, it’s true – that is, the Korean rumor that boiling-hot samgyetang soup will help you cope with Seoul’s energy-sucking humidity. A brief list includes Coex Mall at Samseong Station, the award-winning D-Cube City in Sindorim, Times Square in Yeongdongpo, Enter 6 in Wangsimni, and I-Park Mall in Yongsan. Walking around shopping in Seoul during August isn’t a big deal, provided you choose carefully where you shop Seoul’s vibrant, eclectic, and air-conditioned shopping malls are the new face of old Seoul, offering everything from international and Korean style essentials to electronics and books.

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